David Wild - Full Publication List

Journal Articles and Book Chapters 

2008

• Hur, J. and Wild, D.J. PubChemSR: A search and retrieval tool for PubChem, Chemistry Central Journal, 2008, 2, 11.
• Shankar, K., Wild, D.J., An, J., Narayanan, S., Shoulders, S. Information technology in times of crisis: Considering knowledge management for disaster management. In E. Bolisani (Ed.) Building the Knowledge Society on the Internet: Sharing and Exchanging Knowledge in Networked Environments. IGI Global, Hershey, 2008.
  

2007 

• Willighagen, E., O'Boyle, N.M., Gopalakrishnan H., Jiao, D., Guha,  R., Steinbeck, C. and Wild, D.J. Userscripts for the Life Sciences, BMC Bioinformatics, 2007, 8, 487. 
  
• Wang, H., Klinginsmith, J., Dong, X., Lee, A.C., Guha, R., Wu, Y., Crippen, G.M., and Wild, D.J. Chemical Data Mining of the NCI Human Tumor Cell Line Database, Journal of Chemical Information and Modeling, 2007; 47(6), 2063-2076.

• Dong, X., Gilbert, K.E., Guha, R., Heiland, R., Kim, J., Pierce, M.E. Pierce, Fox, G.C. and Wild, D.J. Web service infrastructure for chemoinformatics, Journal of Chemical Information and Modeling, 2007; 47(4) pp 1303-1307
• Guha, R., Dutta, D., Wild, D.J., Chen, T. Counting Clusters using R-NN Curves. Journal of Chemical Information and Modeling, 2007; 47(4) pp 1308-1318
• Dutta, D., Guha, R., Wild, D., and Chen, T. Ensemble Feature Selection: Consistent Descriptor Subsets for Multiple QSAR Models, Journal of Chemical Information and Modeling, 2007; 47(3), pp 989 - 997

2006

• Wild, D.J. and Wiggins, G.D. Challenges for chemoinformatics education in drug discovery. Drug Discovery Today, 11, 9&10 (May 2006), pp436-439
• Wild, D.J. and Wiggins, D. Videoconferencing and Other Distance Education Techniques in Chemoinformatics Teaching and Research at Indiana University. Journal of Chemical Information & Modeling 2006; 46(2) pp 495 - 502
• Wild, D.J.. Strategies for Using Information Effectively in Early-stage Drug Discovery, in Ekins, S. (ed), Computer Applications in Pharmaceutical Research and Development. Wiley-Interscience, Hoboken, 2006.
  

Prior to 2006 

• Artymiuk, P.J., Bath, P.A., Grindley, H.M., Pepperrell, C.A., Poirrette, A.R., Rice, D.W., Thorner, D.A., Wild, D.J., Willett, P., Similarity Searching in Databases of Three-Dimensional Molecules and Macromolecules, Journal of Chemical Information and Computer Sciences, 1992, 32, 617-630.
• Wild, D.J., Willett, P. Similarity Searching in Files of Three-Dimensional Chemical Structures. Implementation of Atom Mapping on the Distributed Array Processor DAP-610, the MasPar MP-1104, and the Connection Machine CM-200. Journal of Chemical  Information and Computer Sciences, 1994, 34, 224-231.
• Wild, D.J., Willett, P. Similarity Searching in Files of Three-Dimensional Chemical Structures: Alignment of Molecular Electrostatic Potential Field with a Genetic Algorithm, Journal of Chemical Information and Computer Sciences, 1996, 36, 159-167.
• Thorner, D.A., Wild, D.J., Willett, P., Wright, P.M. Similarity Searching in Files of Three-Dimensional Chemical Structures: Flexible Field-Based Searching of Molecular Electrostatic Potentials, Journal of Chemical Information and Computer Sciences, 1996, 36, 900-908.
• Wild, D.J., Willett, P. Field-Based Similarity Searching in Databases of Three-Dimensional Chemical Structures, in Collier, H. (ed), Proceedings of the 1997 International Chemical Information Conference, Tetbury:Infonortics, 1997
• Thorner, D.A., Wild, D.J., Willett, P., Wright, P.M. Calculation of Structural Similarity by the Alignment of Molecular Electrostatic Potentials, Perspectives in Drug Discovery and Design, 1998, 9/10/11, 301-320
• Gillett, V.J., Wild, D.J., Willett, P., Bradshaw, J., Similarity and Dissimilarity Methods for Processing Chemical Structure Databases, The Computer Journal, 1998, 41, 547-558
• Drayton, S.K., Edwards, K., Jewell, N., Turner, D.B., Wild, D.J., Willett, P., Wright, P. M., Simmons, K., Similarity Searching in Files of Three-Dimensional Chemical Structures: Identification Of Bioactive Molecules, Internet Journal of Chemistry (www.ijc.com); 1, 1998
• Wild, D.J., Blankley, C.J. VisualiSAR: A Web-Based Application for Clustering, Structure Browsing and SAR Study, Journal of Molecular Graphics and Modelling, 1999, 17, 85-89.
• Wild, D.J., Blankley, C.J. Comparison of 2D Fingerprint Types and Hierarchy Level Selection Methods for Structural Grouping using Wards Clustering, Journal of Chemical Information and Computer Sciences, 2000, 40, 155-162.
• Bohl, M., Dunbar, J., Gifford, E.M., Heritage, T., Wild, D.J., Willett, P., Wilton, D.J. Scaffold Searching: Automated Identification of Similar Ring Systems for the Design of Combinatorial Libraries. Quantitative Structure-Activity Relationships, 2002, 21, 6.