HIGHLIGHTS
For an overview of my latest research in aggregating and data mining drug discovery information, see this presentation.
RESEARCH SUMMARY
My research is in the areas of cheminformatics (a.k.a. chemoinformatics), data mining, cyberinfrastructure, semantic web and Web 2.0. My focus is on the development of frameworks and tools for integrative data mining of drug discovery information. For more information on my research, take a look at the Cheminformatics Group Wiki.
LATEST PUBLICATIONS
These are the most recent publications: for a full list see my Full Publications List. You can also take a look at my ResearcherID Homepage for citation statistics on papers that are indexed.
2009
- Wild, D.J. Grand Challenges for Cheminformatics, Journal of Cheminformatics, 2009, 1, 1.
- Jiao, D. and Wild, D.J. Extraction of CYP Chemical Interactions from Biomedical Literature Using Natural Language Processing Methods, Journal of Chemical Information and Modeling, 49(2); pp263-269
- Dong, X. and Wild, D.J. An Automatic Drug Discovery Workflow Generation Tool using Semantic Web Technologies, Proceedings of the 4th IEEE conference on eScience, Dec. 2008, p652-657.
2008
- Guha, R., Gilbert, K., Fox, G., Pierce, M., Wild, D.J. and Yuan, H. Advances in Cheminformatics Methodologies and Infrastructure to Support the Data Mining of Large, Heterogeneous Chemical Datasets. Current Computer-Aided Drug Design. Submitted November 2008.
- Chen, B. and Wild, D.J. Building predictive models from PubChem BioAssay data, Journal of Chemical Information and Modeling. Submitted November 2008.
- Fox, G.C., Guha, R., McMullen, D.F., Mustacoglu, A.F., Pierce, M.E., Topcu, A.E., and Wild, D.J. Web 2.0 for Grids and eScience. In Grid Enabled Remote Instrumentation, Springer 2008.
- Wild, D.J. and Beckman, R. The future of chemical information searching. In Banville, D. (ed). Chemical Information Mining: Facilitating Literature-Based Discovery. CRC Press 2008.
- Hur, J. and Wild, D.J. PubChemSR: A search and retrieval tool for PubChem, Chemistry Central Journal, 2008, 2, 11.
- Shankar, K., Wild, D.J., An, J., Narayanan, S., Shoulders, S. Information technology in
times of crisis: Considering knowledge management for disaster
management. In E. Bolisani (Ed.) Building the Knowledge Society on the Internet: Sharing and Exchanging Knowledge in Networked Environments. IGI Global, Hershey, 2008.
2007
- Willighagen, E., O'Boyle, N.M., Gopalakrishnan H., Jiao, D., Guha, R., Steinbeck, C. and Wild, D.J. Userscripts for the Life Sciences, BMC Bioinformatics, 2007, 8, 487.
- Guha, R., Wiggins, G.D., Wild, D.J., Baik, M.H., Pierce, M.E., and Fox, G.C. Improving usability and accessibility of cheminformatics tools for chemists through cyberinfrastructure and education, Cheminformatics, Accepted September 2007.
- Wang, H., Klinginsmith, J., Dong, X., Lee, A.C., Guha, R., Wu,
Y., Crippen, G.M., and Wild, D.J. Chemical Data Mining of the NCI Human Tumor Cell Line Database, Journal of Chemical Information and Modeling, 2007; 47(6), 2063-2076.
- Dong, X., Gilbert, K.E., Guha, R., Heiland, R., Kim, J., Pierce, M.E. Pierce, Fox, G.C. and Wild, D.J. Web service infrastructure for chemoinformatics, Journal of Chemical Information and Modeling, 2007; 47(4) pp 1303-1307.
- Guha, R., Dutta, D., Wild, D.J., Chen, T. Counting Clusters using R-NN Curves. Journal of Chemical Information and Modeling, 2007; 47(4) pp 1308-1318
- Dutta, D., Guha, R., Wild, D., and Chen, T. Ensemble Feature Selection: Consistent Descriptor Subsets for Multiple QSAR Models, Journal of Chemical Information and Modeling, 2007; 47(3), pp 989 - 997
PRESENTATIONS & CONFERENCES
- 4th IEEE International Conference on eScience, December 7-12, 2008, Indianapolis, Indiana. Organizer for eScience for Cheminformatics and Drug Discovery workshop.
- 20th Bicentennial Conference on Chemical Education, July 2008, Bloomington, Indiana. Symposium chair for Advanced Informatics in Chemistry Education.
- 8th International Conference on Chemical Structures, June 1-5 2008, Noordwijkerhout, Netherlands. Poster presentation: An infrastructure for data mining public chemical & biological information.
- American Chemical Society 235th National Meeting, April 6-10 2008, New Orleans. Presentation: Developing a cheminformatics research and teaching center for the Web 2.0 world
- 4th Joint Conference on Chemoinformatics, June 2007, Sheffield, U.K. Organizing Committee Member. Session chair for clustering session. Presentation: A web service infrastructure for chemoinformatics
- CERMACS 2007, May 2007, Covington, KY. Presentation: A web service infrastructure for cheminformatics,
- University of Michigan Bioinformatics Seminar Series, March 2007, Ann Arbor, Mich. Presentation: Smart Mining of Drug Discovery Information and the Emerging Field of Chemoinformatics, (video available)
- American Chemical Society 233rd National Meeting, March 2007, Chicago. Organizer of Advanced Mining of Life Science Information Symposium. Presentation: Integrating text and literature sources with traditional chemoinformatics tools
- American Chemical Society 232nd National Meeting, September 2006, San Francisco. Presentation: Advanced HTS data mining using web service workflows
- Microsoft eScience Workshop, April 2006, John Hopkins University. Presentation: An agent-based chemistry mining tool for drug discovery
